Biology | Scholarship for Nigerians and Africans - Part 21

PhD Position ‘Genome Mining for Biological Control’, Netherlands

Cucumber is one of the most important vegetables in the world and its genome has recently been sequenced. In the proposed research we will exploit this information to improve cucumber traits involved in indirect plant defense (enhancing biological control) and to identify new genes that are (strongly) induced by spider mites and thrips, two major pest herbivores in cucumber. In response to herbivory, plants release a complex blend of volatiles providing valuable cues for herbivores and their natural enemies. In cucumber, the volatile profile emitted after spider-mite or thrips infestation mainly consists of terpenoids, such as (E)-?-ocimene and (E)-4,8-dimethyl nonatriene. Both components are known to be attractive to predatory mites and other natural enemies. Previous research demonstrated that biological control of cell-feeding herbivores, such as spider mites but also thrips, can be improved by changing the volatile emission either through a GMO approach by introduction of terpene synthase genes or by exploiting the genetic variation in induced volatile emission already present in cucumber. In the research proposed here we will exploit the recently available knowledge about the cucumber genome to facilitate improvement in biological control of spider mites and thrips in cucumber. Hereto, bioinformatics will be combined with metabolic profiling of volatiles and transcript profiling of the genes that encode for their biosynthesis, in various cucumber accessions. Furthermore, we will study the behaviour of various natural enemies of spider mites and thrips. Our integrated approach consisting of bioinformatics, metabolite profiling, transcriptomics and behavioural analyses will lead to the identification of genes and their regulatory sequences that in cucumber are responsible for (induced) indirect defence mechanisms. The anticipated results will lead to improved biological control of spider mites and thrips in cucumber.

Eligibility:
An MSc degree in Biology, Plant Biotechnology or Plant Sciences with a multidisciplinary profile. You should be a molecular biologist or plant biotechnologist with affinity to bioinformatics and interest in insect-plant interactions. Experience with investigating arthropod behavior and statistics will be considered an additional value. You should be a team player with demonstrable experience in collaboration with (bio)chemists, and/or entomologists. You have a good knowledge of the English language (oral and written), and have excellent communication skills.
Scholarship Application Deadline: 14 January 2011
Further Scholarship Information and Application

2 PhD Positions, Genetical Genomics of Insect-Plant Interactions, Netherlands

A major impediment in selecting resistant crop lines is that large numbers of crop lines need to be screened for the effects they have on pest insects. Moreover, the mechanisms of resistance to one pest are not necessarily also effective to another pest so that different pest species require their own approach. The goal of this research programme is to develop an automated methodology to screen large numbers of crop lines for resistance to two major pest species in Dutch greenhouse crops, aphids and thrips, and identify the responsible genetic loci by a genetical genomics approach. The method will be developed for Arabidopsis by taking advantage of the HapMap collection of ca 400 Arabidopsis accessions that have been collected globally and genotyped for 250.000 SNPs. Tools will be developed to objectively quantify differences in insect resistance in a rapid and reliable way, and subsequently genes and molecular markers will be identified for different resistance mechanisms in the model plant Arabidopsis. Subsequently, this knowledge will be transferred to ornamental and other crops. In this multidisciplinary proposal, the mechanisms will be characterized at the molecular, biochemical, physiological and ecological level and can subsequently, together with the novel insect behaviour assay systems, be used to screen large numbers of lines of various crop species for orthologous genes and markers involved in similar resistance mechanisms. For this research programme we will employ 2 PhD students.

Eligibility:
An MSc degree in Biology, Plant Biotechnology or Plant Sciences with a multidisciplinary profile. You should be a molecular biologist or plant biotechnologist with affinity to ecology of insect-plant interactions or an insect-plant ecologist that has experience with molecular techniques. Experience with investigating arthropod behaviour, statistics and computer technology will be considered an additional value. You should be a team player with demonstrable experience in collaboration with ecologists, molecular biologists and/or entomologists. Excellent communication skills.
Scholarship Application Deadline: 16 January 2011
Further Scholarship information and Application

Postdoctoral Position:Contagious Bovine Pleuropneumonia, Nairobi

The International Livestock Research Institute (ILRI) works at the crossroads of livestock and poverty, bringing high-quality livestock science, communications and capacity building to bear on poverty reduction and sustainable development. ILRI is one of 15 centres supported by the Consultative Group on International Agricultural Research (CGIAR). ILRI has campuses in Kenya (headquarters) and Ethiopia, with other offices located in other regions of Africa (Mali, Mozambique, Nigeria) as well as in South Asia (India, Sri Lanka), Southeast Asia (Laos, Thailand, Vietnam) and East Asia (China).

Responsibilities

* Contribute to efforts to develop an improved diagnostic test for CBPP
* Assist with activities supporting the generation of a panel of Mycoplasmamycoides-specific antibodies
* Assist with activities related to the detection of Mycoplasmamycoides proteins expressed in vivo
* Assist with activities related to the genome transplantation and mutagenesis of Mycoplasmamycoides

Requirements
* A PhD degree obtained no more than 5 years ago in the field of microbiology, immunology or molecular biology
* Excellent communication and interpersonal skills and the ability to perform in multidisciplinary and multicultural research environment.
* Willingness and ability to travel to partners in Namibia and Europe.

Scholarship Application Deadline:31 January 2011

Further Scholarship Information and Application