bioinformatics | Scholarship for Nigerians and Africans - Part 11

PhD Fellowships in IMPRS ‘Primary Metabolism and Plant Growth’, Germany: Plany Genomics and Systems Biology

The IMPRS ‘Primary Metabolism and Plant Growth’ is a doctoral programme in plant genomics and systems biology at the Max Planck Institute of Molecular Plant Physiology and the University of Potsdam. Talented graduate students are accepted into the programme at regular intervals.

We are currently inviting applications for PhD fellowships to start summer/autumn 2011.

We seek highly motivated students who can tackle scientific problems in modern plant biology. Doctoral projects will focus on systems-oriented approaches using the model plant Arabidopsis thaliana. Our research combines molecular phenotyping (‘omics’) technologies and cutting-edge analytical techniques with bioinformatics and modelling.

We offer excellent research facilities, interdisciplinary scientific training, and a comprehensive complementary training programme. Our working language is English.

Students holding or about to obtain a Master’s or equivalent degree in biology, biochemistry, chemistry, physics, informatics, mathematics, or related fields are encouraged to apply.
The IMPRS-PMPG is embedded in a vibrant research community with more than 100 doctoral students under the guidance of our faculty, their groups, and departments. The Max Planck Institute of Molecular Plant
Physiology is one of the largest plant research centres in Europe. The Science Park Potsdam-Golm hosts three Max Planck Institutes, two Fraunhofer Institutes, the University of Potsdam, and a centre for start-up companies, providing an excellent infrastructure for modern cross-disciplinary training. The campus is located in close proximity to the many research and educational facilities in Berlin.

Apply Please apply via the online application on the IMPRS-PMPG website only.

Scholarship Application Deadline: 28 January 2011

Further Scholarship Information and Application

PhD Position ‘Genome Mining for Biological Control’, Netherlands

Cucumber is one of the most important vegetables in the world and its genome has recently been sequenced. In the proposed research we will exploit this information to improve cucumber traits involved in indirect plant defense (enhancing biological control) and to identify new genes that are (strongly) induced by spider mites and thrips, two major pest herbivores in cucumber. In response to herbivory, plants release a complex blend of volatiles providing valuable cues for herbivores and their natural enemies. In cucumber, the volatile profile emitted after spider-mite or thrips infestation mainly consists of terpenoids, such as (E)-?-ocimene and (E)-4,8-dimethyl nonatriene. Both components are known to be attractive to predatory mites and other natural enemies. Previous research demonstrated that biological control of cell-feeding herbivores, such as spider mites but also thrips, can be improved by changing the volatile emission either through a GMO approach by introduction of terpene synthase genes or by exploiting the genetic variation in induced volatile emission already present in cucumber. In the research proposed here we will exploit the recently available knowledge about the cucumber genome to facilitate improvement in biological control of spider mites and thrips in cucumber. Hereto, bioinformatics will be combined with metabolic profiling of volatiles and transcript profiling of the genes that encode for their biosynthesis, in various cucumber accessions. Furthermore, we will study the behaviour of various natural enemies of spider mites and thrips. Our integrated approach consisting of bioinformatics, metabolite profiling, transcriptomics and behavioural analyses will lead to the identification of genes and their regulatory sequences that in cucumber are responsible for (induced) indirect defence mechanisms. The anticipated results will lead to improved biological control of spider mites and thrips in cucumber.

Eligibility:
An MSc degree in Biology, Plant Biotechnology or Plant Sciences with a multidisciplinary profile. You should be a molecular biologist or plant biotechnologist with affinity to bioinformatics and interest in insect-plant interactions. Experience with investigating arthropod behavior and statistics will be considered an additional value. You should be a team player with demonstrable experience in collaboration with (bio)chemists, and/or entomologists. You have a good knowledge of the English language (oral and written), and have excellent communication skills.
Scholarship Application Deadline: 14 January 2011
Further Scholarship Information and Application

PhD Student for Molecular Carcinogenesis, Netherlands: Biomedical Sciences

Recurring chromosomal abnormalities have been identified in a variety of cancers, but are most frequently associated with haematological malignancies such as acute myeloid leukemia (AML). These cytogenetic changes often cause gene fusions leading to expression of chimeric oncofusion proteins. In this project you will focus on unravelling the role of these oncofusion proteins in carcinogenesis. Your aim will be to identify the binding regions, the transcriptional consequences and epigenetic features associated with oncofusion protein expression. You will use next-generation sequencing to identify oncofusion protein target sites, which then will be further characterized, structurally as well as functionally, in relation to the aetiology of acute myeloid leukemia.

Requirements
You should have:
• an MSc degree in Biomedical Sciences/Biology/Molecular Life Sciences/Bioinformatics;
• experience in Molecular and Cell Biology and/or Bioinformatics;
• a strong affinity for fundamental research related to human disease;
• a well-structured working style;
• well-developed social and communication skills.

Conditions of employment
Employment: 1,0 fte
Maximum salary per month, based on a fulltime employment: € 2,612 gross/month
The starting salary is € 2,042 per month and will increase to € 2,612 per month in the fourth year. PhD scale.
Duration of the contract: 4 years
Scholarship Application Deadline: 14 January 2011
Further Scholarship Information and Application