bioinformatics | Scholarship for Nigerians and Africans - Part 12

PhD Stipend in Bioinformatics, Faculty of Life Sciences, University of Copenhagen, Denmark

Within recent years, it has become evident that non-coding RNAs (ncRNAs) play numerous important roles in the cell. Many ncRNAs contain a characteristic RNA structure, a hallmark that (albeit often at a high computational cost) can be exploited by in silico screens. These screens are in essence based on a search for RNA secondary structures. The goals of the Ph.D. project is to design methods to conduct in particular local structural alignments of RNA structures to be exploited for structure search in genomic sequence as well as structural clustering of the RNAs.The project will be carried out in collaboration with people in the Center for non-coding RNA in Technology and Health.

Qualification requirements
The applicant should hold professional as well as personal skills and qualifications as stated below:
* A master degree in Bioinformatics, computational biology, biology or similar.
* Basic knowledge of biological sequences.
* Experience with algorithm development.
* Experience with Perl or Python (or similar)
* Experience with one (or more) of C, C++ or Java.
* It is an advantage (but not a requirement) to have general knowledge about RNA structure and folding, RNA gene search algorithms and algorithms for structural alignment or RNAs.
* The Ph.D. candidate should also possess good interpersonal skills.

Scholarship Application Deadline: February 1st, 2011

Further Scholarship Information and Application

Postdoctoral Fellowship Next Generation Sequencing Bioinformatics, Netherlands

You will be part of a growing team of a skilled bioinformatics team led by Dr. Morris Swertz embedded in high impact publishing genetics and bioinformatics research departments of >45 researchers (Prof. dr. CIsca Wijmenga, Prof. dr. Ritsert Jansen, >15 recent publications in Nature journals). We offer you access to a state-of-the-art next generation sequencing (NGS) facility, innovative a broad range of human and model organism labs, and collaboration with major national and international research groups including visits and stays.

We are looking for a postdoc to take the bioinformatics lead in exciting next generation sequencing projects such as to sequence 750 Dutch individuals (“Genome of the Netherlands project, BBMRI-NL) and to contribute to innovative analysis methods, high impact variation publications, dynamic software infrastructures and new diagnostic tools for the next generation of medical care.

What do we need?
The ideal candidate is a motivated PhD graduate with experience and background in bioinformatics, genetics, molecular biology and/or biotechnology, excited as we are to explore next-generation sequencing data, embark on ‘TB scale’ bioinformatics analyses, with excellent track record, good command of the English language, and a growing bioinformatics toolbox with statistical methods, knowledge of public tools, personal scripts, and so on.

What do we offer?
We offer a full-time contract for a period of 3 to 5 years and a starting salary € 3052-3279 gross per month (depending on qualifications/experience, Dutch UMC scale 10, 11).
Fellowship Application Deadline: 11 January 2011
Further Fellowship Information and Application

PhD Scholarship at University of Groningen, Netherlands

A better understanding of complex or polygenic diseases has become a major research topic in the field of human genetics. A common hypothesis in this field is “common disease, common variant”, which suggests that complex diseases are caused by a large set of common but weak disease-associated variants. To find these common variants, genome-wide association studies (GWAS) are being undertaken to detect the genomic loci (and the genes therein) in many common, complex diseases. However, the identified loci usually only account for a fraction of the total genetic risk. This project is based on a complementary hypothesis, namely that besides many common weak mutations, complex diseases also need several rare, but probably stronger, mutations. To test this hypothesis we will work on a highly heritable, complex disorder called Hirschsprung disease (HSCR).

The two PhD students will combine next generation sequencing with expression data generated from enteric nervous system progenitors (in both man and mouse) and functionally analyse potential candidate disease genes in vitro and in vivo to test our hypothesis. Not only will we be able to unravel the genetic background of HSCR, but we will also gain a better insight into how the enteric nervous system develops. These findings may also serve as a model for other complex diseases and establish the importance of combinations of rare, coding and non-coding variants in complex disease.

What do we need?
We are looking for candidates with an MSc in molecular cell biology. They should be highly ambitious, have strong social skills, and the ability to work in a multidisciplinary environment. In addition, the candidates should have a strong interest in bioinformatics/biostatistics.
Scholarship Application Deadline: 11 January 2011
Further scholarship Information and Application