Biology | Scholarship for Nigerians and Africans - Part 36

PhD Positions, Göttingen Graduate School for Neurosciences and Molecular Biosciences, Germany

The Göttingen Graduate School for Neurosciences and Molecular Biosciences (GGNB) was founded in 2007 as a joint enterprise between the University of Göttingen, three Max Planck Institutes, and the German Primate Center. GGNB is funded by the Excellence Initiative of the German federal and state governments.
Ten doctoral programs are currently united under the roof of GGNB, sharing a common interdisciplinary training platform for their Ph.D. candidates. All courses are in English. Each Ph.D. candidate is affiliated with one of the doctoral programs of GGNB where he/she receives individual counseling and is guided in his/her thesis work by a thesis committee of at least three faculty members. We invite for applications for Ph.D. positions in Biology / Physics / Chemistry in the following doctoral programs:
• Biomolecules: Structure – Function – Dynamics
• Molecular Biology of Microbial, Animal and Plant Cells
• Molecular Biology of Development and Interaction between Organisms
• International Max Planck Research School “Physics of Biological and Complex Systems”
• Molecular Physiology of the Brain
• Sensory and Motor Neuroscience
• Systems Neuroscience
• Theoretical and Computational Neuroscience

Scholarships and institutionally financed Ph.D. positions are available.

Candidates holding a Master’s degree in the natural sciences or related disciplines and an excellent academic record may apply by 15 September 2010 or also independent of deadlines. See www.ggnb.uni-goettingen.de for details.
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Postdoctoral Position in Mechanical Screening and Selection of Circulating Cells, Netherlands

The Department of Biomedical Engineering is a cooperation of Eindhoven University of Technology (TU/e) and the Faculty of Health, Medicine and Life Sciences of the University of Maastricht. The department participates in distinguishing research programs. Research areas are Molecular Bioengineering & Molecular Imaging; Biomechanics & Tissue Engineering; and Biomedical Imaging & Modeling. TU/e is situated in the European technology hotspot ‘Brainport Eindhoven’, known for its many high-tech industries and start-ups. A sparkling environment with opportunities for talented people.

The Department of Mechanical Engineering considers as the core of their activities design, realization and analysis of new products, processes and materials. Besides the basis of (solid and fluid) mechanics, materials, control and thermodynamics, parts of mathematics, physics, chemistry and computing science are important supporting tools. The field is explored by a combination of modeling using fundamental concepts and applied engineering and technology. Automotive Engineering Science and Micro- amp; Nano-Scale Engineering are important departmental themes. The Mechanical Engineering Department comprises about 1000 students and 250 staff members.

Cell lysis is the process of disrupting a cell membrane in order to obtain intracellular material, such as DNA, RNA, proteins, organelles, mitochondria, chloroplasts, etc, for further analysis or use. This is therefore an essential step in many biological and biomedical applications, for example for the sequencing of DNA originating from prokaryotic and eukaryotic cells, or for infectious disease testing in which NA of bacteria or viruses must be detected. There are a number of existing lysis methods. Most of them use large volumes and are not suitable for integration in lab-on-chip systems. Methods using chemicals and /or enzymes to lyse cells could be miniaturized, but are considered to be too expensive or too invasive in disposable diagnostic systems. Our approach is to use the combination of electroporation (using electric fields generated by electrodes integrated in the device) with elongational flows to lyse cells in a controlled way within a micro-fluidic system. The advantage of this approach is that it may lead to a gentle, controlled lysis procedure. In addition, the approach would give the opportunity to study cell lysis in a controlled way in order to understand the process better.

The basic idea is that electroporation introduces controlled defects in the cell membrane, effectively weakening it. A subsequent exposure of the cell to an elongational flow would then deform it until complete lysis occurs. This process is reminiscent of classical fracture mechanics approaches.

The aim of the PostDoc project is to design variations of fluidic and electrode geometries to study the lysis method, in particular the effect of lysis on cell content, e.g. proteins or complexes of proteins. The device and the method need to be optimized to obtain a highly controllable method. The focus will be on circulating cells from the blood stream. Based on the experimental results, a model describing the cell failure has to be developed. This model will basically consist of the viscoelastic model for cell deformation, extended with a failure model. The combination of the numerical model and the experiments will lead to a better understanding and prediction of the effects of cell lysis. The project is embedded in a larger research program on ‘Circulating Cells’, performed by a consortium of several academic, clinical and industrial partners and funded by the Center for Translational Molecular Medicine (CTMM). The PostDoc will interact with these partners, and will be collaborating with existing activities on cell mechanical studies at the Materials Technology Institute.

Requirements

We are looking for candidates with a PhD in biomedical engineering, mechanical engineering, applied chemistry, etc. with a strong affinity for experimental and/or numerical micro-fluidic experiments, cell biology or mechanics, and biomedical applications.

Appointment and Salary

We offer:

* A challenging job at a dynamic and ambitious University
* The appointment is for one year. After a good evaluation your contract can be extended with 7 more months.
* The gross monthly salary will be in accordance with the Collective Labor Agreement of the Dutch Universities (CAO NU) and amounts initially to at least € 2861 per month (scale 10.4) depending on prior experience.
* An attractive package of fringe benefits (including excellent work facilities, end of the year allowance and sport facilities).

Application Deadline 31-08-2010
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PhD Scholarships in Environmental Engineering/Biotechnology, Denmark Technical University

The scholarships are supported by several research grants (MIRESOWA, DW Biofilter, Ecodesign MBR) with the objective to develop and optimize biotechnological solutions for drinking water and wastewater handling.

The drinking water projects have a specific emphasis on analyzing and optimizing biological rapid sand filtration technologies for both bulk and trace pollutant removal. The wastewater project has a specific emphasis on analyzing and optimizing autotrophic N removal in membrane-bioreactors. In both projects, candidates are sought with training and interest in one or more of the following: molecular microbial ecology, bioprocess engineering, and process modeling.

The successful candidates will be employed at DTU Environment within the framework of the Urban Water Technology graduate school (www.urbanwatertech.dk), and work under the supervision of the PIs and post-doctoral associates. DTU Environment offers state-of-the art chemical, microbial, and biomolecular analytical facilities, process laboratories, and equipment to execute this project. These project benefits from several interactions (and possible research exchanges) with other leading research groups in DK, EU, and USA and interactions with leading-edge technology providers.

This research is supported by the projects MIRESOWA, DW Biofilter, and EcoDesign MBR, funded by the Danish Council for Strategic Research (DSF).

The 6 PhD scholarships
PhD1: Molecular mapping of the diversity of ammonia and iron/manganese oxidizing bacteria at full-scale biological rapid sand filters.

PhD 2 & 3: Analysis and optimization of conditions that drive biological ammonia or iron/manganese removal in bench-scale rapid sand filters.

PhD 4: Model-based Analysis and Optimization of biological rapid sand filters at pilot and full-scale.

PhD 5: Trace pollutant removal via bioreactive barriers in groundwater extraction wells: Characterization and enhancement of microbial processes

PhD 6: Molecular and microscopic analysis of spatial and metabolic interactions in nitritation/annamox bioaggregates

Qualifications
The successful candidates will have a high motivation for research and solid written and oral communication skills. The applicants will enjoy working in and contributing to an international and cross-disciplinary research team. English is the operational language of the department.

At the date of appointment, candidates must have obtained a M. Sc. in Environmental Engineering, Chemical Engineering, Environmental Science, Chemistry, Microbiology, Microbial Ecology or related discipline, evidence of research experience, and significant exposure to one or more of the following fields: basic molecular microbiology; microbial ecology; mathematical modeling and computational analysis applied to environmental/microbial systems; bioreactor technology.

Approval and Enrolment
The scholarships for the PhD degree are subject to academic approval and the candidates will be enrolled in one of the general degree programmes of DTU. For information about the general requirements for enrolment and the general planning of the scholarship studies, please see the DTU PhD Guide.

Salary and appointment terms
The salary and appointment terms are consistent with the current rules for PhD degree students.
The positions are available for a three-year period with start from 1 September 2010 or as soon as possible.


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